LOCUS pRF_400_to__1 7555 bp ds-DNA circular 14-JUL-2008 SOURCE ORGANISM COMMENT COMMENT ApEinfo:methylated:1 FEATURES Location/Qualifiers promoter 34..347 /vntifkey="29" /label=SV40\promoter\and\enhancer /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2177..2376 /label=ORF1 /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=green CDS 721..1656 /vntifkey="4" /label=RLuc /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 4504..4740 /label=Enhancer /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 CDS 2579..4231 /vntifkey="4" /label=FLuc /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 348..451 /label=SV40 Promoter /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 348..397 /label=SV40 transcription start sites region /ApEinfo_fwdcolor=#ffb1be /ApEinfo_revcolor=#ffb1be rep_origin 5055..5055 /vntifkey="33" /label=ColE1-derived\plasmid\replication\origin /ApEinfo_fwdcolor=#00c0cb /ApEinfo_revcolor=#00c0cb misc_feature 516..648 /label=chimeric intron /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan CDS complement(5817..6677) /vntifkey="4" /label=beta-lactamase /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 693..711 /label=T7 promoter /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan misc_feature 392..392 /label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff rep_origin 6809..7264 /vntifkey="33" /label=F1\Origin /ApEinfo_fwdcolor=#00c0cb /ApEinfo_revcolor=#00c0cb misc_feature 710..710 /label=T7 transcription start (+1) /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 397..397 /label=SV40 transcription start (+1)(1) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff polyA_signal 7395..7548 /vntifkey="25" /label=Synthetic\(upstream)\polyA\signal /ApEinfo_fwdcolor=#ff00cb /ApEinfo_revcolor=#ff00cb misc_feature 348..348 /label=SV40 transcription start (+1)(2) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#ff00ff /ApEinfo_revcolor=#ff00ff misc_feature 1672..2170 /vntifkey="21" /label=deltaEMCV /ApEinfo_fwdcolor=#d0ff00 /ApEinfo_revcolor=#d0ff00 misc_feature 386..386 /label=SV40 transcription start (+1)(3) /ApEinfo_label=SV40 transcription start (+1) /ApEinfo_fwdcolor=#fe00ff /ApEinfo_revcolor=#fe00ff misc_feature 4263..4484 /label=SV40 Late poly(A) signal /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2171..2176 /label=EcoRI /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2577..2582 /label=NcoI /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 2177..2576 /label=LINE1 -400 to -1 from ORF2 /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan ORIGIN 1 ggtaccgagc tcttacgcgt gctagcccga tctgcgcagc accatggcct gaaataacct 61 ctgaaagagg aacttggtta ggtaccttct gaggcggaaa gaaccagctg tggaatgtgt 121 gtcagttagg gtgtggaaag tccccaggct ccccagcagg cagaagtatg caaagcatgc 181 atctcaatta gtcagcaacc aggtgtggaa agtccccagg ctccccagca ggcagaagta 241 tgcaaagcat gcatctcaat tagtcagcaa ccatagtccc gcccctaact ccgcccatcc 301 cgcccctaac tccgcccagt tccgcccatt ctccgcccca tggctgaCTA ATTTTTTTTA 361 TTTATGCAGA GGCCGAGGCC GCCTCGGCCT CTGAGCTATT CCAGAAGTAG TGAGGAGGCT 421 TTTTTGGAGG CCTAGGCTTT TGCAAAAAGC Ttgattcttc tgacacaaca gtctcgaact 481 taagctgcag aagttggtcg tgaggcactg ggcagGTAAG TATCAAGGTT ACAAGACAGG 541 TTTAAGGAGA CCAATAGAAA CTGGGCTTGT CGAGACAGAG AAGACTCTTG CGTTTCTGAT 601 AGGCACCTAT TGGTCTTACT GACATCCACT TTGCCTTTCT CTCCACAGgt gtccactccc 661 agttcaatta cagctcttaa ggctagagta ctTAATACGA CTCACTATAG Gctagccacc 721 atgacttcga aagtttatga tccagaacaa aggaaacgga tgataactgg tccgcagtgg 781 tgggccagat gtaaacaaat gaatgttctt gattcattta ttaattatta tgattcagaa 841 aaacatgcag aaaatgctgt tattttttta catggtaacg cggcctcttc ttatttatgg 901 cgacatgttg tgccacatat tgagccagta gcgcggtgta ttataccaga ccttattggt 961 atgggcaaat caggcaaatc tggtaatggt tcttataggt tacttgatca ttacaaatat 1021 cttactgcat ggtttgaact tcttaattta ccaaagaaga tcatttttgt cggccatgat 1081 tggggtgctt gtttggcatt tcattatagc tatgagcatc aagataagat caaagcaata 1141 gttcacgctg aaagtgtagt agatgtgatt gaatcatggg atgaatggcc tgatattgaa 1201 gaagatattg cgttgatcaa atctgaagaa ggagaaaaaa tggttttgga gaataacttc 1261 ttcgtggaaa ccatgttgcc atcaaaaatc atgagaaagt tagaaccaga agaatttgca 1321 gcatatcttg aaccattcaa agagaaaggt gaagttcgtc gtccaacatt atcatggcct 1381 cgtgaaatcc cgttagtaaa aggtggtaaa cctgacgttg tacaaattgt taggaattat 1441 aatgcttatc tacgtgcaag tgatgattta ccaaaaatgt ttattgaatc ggacccagga 1501 ttcttttcca atgctattgt tgaaggtgcc aagaagtttc ctaatactga atttgtcaaa 1561 gtaaaaggtc ttcatttttc gcaagaagat gcacctgatg aaatgggaaa atatatcaaa 1621 tcgttcgttg agcgagttct caaaaatgaa caataattct aggggctcga gcgcccctct 1681 ccctcccccc cccctaacgt tactggccga agccgcttgg aataaggccg gtgtgcgttt 1741 gtctatatgt tattttccac catattgccg tcttttggca acgtgagggc ccggaaacct 1801 ggccctgtct tcttgacgag caatcctaga gcttcttgaa gacaaacaac gtctgtagcg 1861 accctttgca ggcagcggaa ccccccacct ggcgacaggt gcctctgcgg ccaaaagcca 1921 cgtgtataag atacacctgc aaaggcggca caaccccagt gccacgttgt gagttggata 1981 gttgtggaaa gagtcaaatg gctctcctca agcgtattca acaaggggct gaaggatgcc 2041 cagaaggtac ccccttgtat gggatctgat ctggggcctc ggtgcacatg ctttacatgt 2101 gtttagtcga ggttaaaaaa acgtctaggc cccccgaacc acggggacgt ggttttcctt 2161 tgaaaaacac gaattcATAA TAATCAGAAC ATCAAATGCA CTAAATAAAG ATAGAATACT 2221 AAAAGCAGTA AGGGAAAAAG GTCAAGTAAC ATATAAAGGC AAGCCTATCA GAATTACACC 2281 AGATTTTTCA CCAGAGACTA TGAAAGCCAG AAGAGCCTGG ACAGATGTTA TACAGACACT 2341 AAGAGAACAC AAACTGCAGC CCAGGCTACT ATACCCAGCC AAACTCTCAA TTATCATAGA 2401 GGGAGAAACC AAAGTATTCC ACGACAAAAC CAAATTCACG CATTATCTCT CCACGAATCC 2461 AGCCCTTCAA AGGATAATAA CAGAAAAAAA CCAATACAAG AACGGGAACA ACGCCCTAGA 2521 AAAAACAAGA AGGTAATCCC TCAACAAACC TAAAAGAAGA CAGCCACAAG AACAGAccat 2581 ggaagacgcc aaaaacataa agaaaggccc ggcgccattc tatccgctgg aagatggaac 2641 cgctggagag caactgcata aggctatgaa gagatacgcc ctggttcctg gaacaattgc 2701 ttttacagat gcacatatcg aggtggacat cacttacgct gagtacttcg aaatgtccgt 2761 tcggttggca gaagctatga aacgatatgg gctgaataca aatcacagaa tcgtcgtatg 2821 cagtgaaaac tctcttcaat tctttatgcc ggtgttgggc gcgttattta tcggagttgc 2881 agttgcgccc gcgaacgaca tttataatga acgtgaattg ctcaacagta tgggcatttc 2941 gcagcctacc gtggtgttcg tttccaaaaa ggggttgcaa aaaattttga acgtgcaaaa 3001 aaagctccca atcatccaaa aaattattat catggattct aaaacggatt accagggatt 3061 tcagtcgatg tacacgttcg tcacatctca tctacctccc ggttttaatg aatacgattt 3121 tgtgccagag tccttcgata gggacaagac aattgcactg atcatgaact cctctggatc 3181 tactggtctg cctaaaggtg tcgctctgcc tcatagaact gcctgcgtga gattctcgca 3241 tgccagagat cctatttttg gcaatcaaat cattccggat actgcgattt taagtgttgt 3301 tccattccat cacggttttg gaatgtttac tacactcgga tatttgatat gtggatttcg 3361 agtcgtctta atgtatagat ttgaagaaga gctgtttctg aggagccttc aggattacaa 3421 gattcaaagt gcgctgctgg tgccaaccct attctccttc ttcgccaaaa gcactctgat 3481 tgacaaatac gatttatcta atttacacga aattgcttct ggtggcgctc ccctctctaa 3541 ggaagtcggg gaagcggttg ccaagaggtt ccatctgcca ggtatcaggc aaggatatgg 3601 gctcactgag actacatcag ctattctgat tacacccgag ggggatgata aaccgggcgc 3661 ggtcggtaaa gttgttccat tttttgaagc gaaggttgtg gatctggata ccgggaaaac 3721 gctgggcgtt aatcaaagag gcgaactgtg tgtgagaggt cctatgatta tgtccggtta 3781 tgtaaacaat ccggaagcga ccaacgcctt gattgacaag gatggatggc tacattctgg 3841 agacatagct tactgggacg aagacgaaca cttcttcatc gttgaccgcc tgaagtctct 3901 gattaagtac aaaggctatc aggtggctcc cgctgaattg gaatccatct tgctccaaca 3961 ccccaacatc ttcgacgcag gtgtcgcagg tcttcccgac gatgacgccg gtgaacttcc 4021 cgccgccgtt gttgttttgg agcacggaaa gacgatgacg gaaaaagaga tcgtggatta 4081 cgtcgccagt caagtaacaa ccgcgaaaaa gttgcgcgga ggagttgtgt ttgtggacga 4141 agtaccgaaa ggtcttaccg gaaaactcga cgcaagaaaa atcagagaga tcctcataaa 4201 ggccaagaag ggcggaaaga tcgccgtgta attctagagt cggggcggcc ggccgcttcg 4261 agCAGACATG ATAAGATACA TTGATGAGTT TGGACAAACC ACAACTAGAA TGCAGTGAAA 4321 AAAATGCTTT ATTTGTGAAA TTTGTGATGC TATTGCTTTA TTTGTAACCA TTATAAGCTG 4381 CAATAAACAA GTTAACAACA ACAATTGCAT TCATTTTATG TTTCAGGTTC AGGGGGAGGT 4441 GTGGGAGGTT TTTTAAAGCA AGTAAAACCT CTACAAATGT GGTAaaatcg ataaggatct 4501 gaaCGATGGA GCGGAGAATG GGCGGAACTG GGCGGAGTTA GGGGCGGGAT GGGCGGAGTT 4561 AGGGGCGGGA CTATGGTTGC TGACTAATTG AGATGCATGC TTTGCATACT TCTGCCTGCT 4621 GGGGAGCCTG GGGACTTTCC ACACCTGGTT GCTGACTAAT TGAGATGCAT GCTTTGCATA 4681 CTTCTGCCTG CTGGGGAGCC TGGGGACTTT CCACACCCTA ACTGACACAC ATTCCACAGC 4741 ggatccgtcg accgatgccc ttgagagcct tcaacccagt cagctccttc cggtgggcgc 4801 ggggcatgac tatcgtcgcc gcacttatga ctgtcttctt tatcatgcaa ctcgtaggac 4861 aggtgccggc agcgctcttc cgcttcctcg ctcactgact cgctgcgctc ggtcgttcgg 4921 ctgcggcgag cggtatcagc tcactcaaag gcggtaatac ggttatccac agaatcaggg 4981 gataacgcag gaaagaacat gtgagcaaaa ggccagcaaa aggccaggaa ccgtaaaaag 5041 gccgcgttgc tggcgttttt ccataggctc cgcccccctg acgagcatca caaaaatcga 5101 cgctcaagtc agaggtggcg aaacccgaca ggactataaa gataccaggc gtttccccct 5161 ggaagctccc tcgtgcgctc tcctgttccg accctgccgc ttaccggata cctgtccgcc 5221 tttctccctt cgggaagcgt ggcgctttct catagctcac gctgtaggta tctcagttcg 5281 gtgtaggtcg ttcgctccaa gctgggctgt gtgcacgaac cccccgttca gcccgaccgc 5341 tgcgccttat ccggtaacta tcgtcttgag tccaacccgg taagacacga cttatcgcca 5401 ctggcagcag ccactggtaa caggattagc agagcgaggt atgtaggcgg tgctacagag 5461 ttcttgaagt ggtggcctaa ctacggctac actagaagaa cagtatttgg tatctgcgct 5521 ctgctgaagc cagttacctt cggaaaaaga gttggtagct cttgatccgg caaacaaacc 5581 accgctggta gcggtggttt ttttgtttgc aagcagcaga ttacgcgcag aaaaaaagga 5641 tctcaagaag atcctttgat cttttctacg gggtctgacg ctcagtggaa cgaaaactca 5701 cgttaaggga ttttggtcat gagattatca aaaaggatct tcacctagat ccttttaaat 5761 taaaaatgaa gttttaaatc aatctaaagt atatatgagt aaacttggtc tgacagttac 5821 caatgcttaa tcagtgaggc acctatctca gcgatctgtc tatttcgttc atccatagtt 5881 gcctgactcc ccgtcgtgta gataactacg atacgggagg gcttaccatc tggccccagt 5941 gctgcaatga taccgcgaga cccacgctca ccggctccag atttatcagc aataaaccag 6001 ccagccggaa gggccgagcg cagaagtggt cctgcaactt tatccgcctc catccagtct 6061 attaattgtt gccgggaagc tagagtaagt agttcgccag ttaatagttt gcgcaacgtt 6121 gttgccattg ctacaggcat cgtggtgtca cgctcgtcgt ttggtatggc ttcattcagc 6181 tccggttccc aacgatcaag gcgagttaca tgatccccca tgttgtgcaa aaaagcggtt 6241 agctccttcg gtcctccgat cgttgtcaga agtaagttgg ccgcagtgtt atcactcatg 6301 gttatggcag cactgcataa ttctcttact gtcatgccat ccgtaagatg cttttctgtg 6361 actggtgagt actcaaccaa gtcattctga gaatagtgta tgcggcgacc gagttgctct 6421 tgcccggcgt caatacggga taataccgcg ccacatagca gaactttaaa agtgctcatc 6481 attggaaaac gttcttcggg gcgaaaactc tcaaggatct taccgctgtt gagatccagt 6541 tcgatgtaac ccactcgtgc acccaactga tcttcagcat cttttacttt caccagcgtt 6601 tctgggtgag caaaaacagg aaggcaaaat gccgcaaaaa agggaataag ggcgacacgg 6661 aaatgttgaa tactcatact cttccttttt caatattatt gaagcattta tcagggttat 6721 tgtctcatga gcggatacat atttgaatgt atttagaaaa ataaacaaat aggggttccg 6781 cgcacatttc cccgaaaagt gccacctgac gcgccctgta gcggcgcatt aagcgcggcg 6841 ggtgtggtgg ttacgcgcag cgtgaccgct acacttgcca gcgccctagc gcccgctcct 6901 ttcgctttct tcccttcctt tctcgccacg ttcgccggct ttccccgtca agctctaaat 6961 cgggggctcc ctttagggtt ccgatttagt gctttacggc acctcgaccc caaaaaactt 7021 gattagggtg atggttcacg tagtgggcca tcgccctgat agacggtttt tcgccctttg 7081 acgttggagt ccacgttctt taatagtgga ctcttgttcc aaactggaac aacactcaac 7141 cctatctcgg tctattcttt tgatttataa gggattttgc cgatttcggc ctattggtta 7201 aaaaatgagc tgatttaaca aaaatttaac gcgaatttta acaaaatatt aacgcttaca 7261 atttgccatt cgccattcag gctgcgcaac tgttgggaag ggcgatcggt gcgggcctct 7321 tcgctattac gccagcccaa gctaccatga taagtaagta atattaaggt acgggaggta 7381 cttggagcgg ccgcaataaa atatctttat tttcattaca tctgtgtgtt ggttttttgt 7441 gtgaatcgat agtactaaca tacgctctcc atcaaaacaa aacgaaacaa aacaaactag 7501 caaaataggc tgtccccagt gcaagtgcag gtgccagaac atttctctat cgata //