LOCUS pEGFP-CAT-NDST4l 6119 bp ds-DNA circular SYN 14-JUN-2007 DEFINITION . ACCESSION . VERSION . SOURCE . ORGANISM . . FEATURES Location/Qualifiers misc_feature 8..589 /label=immediate early CMV promoter /ApEinfo_fwdcolor=#ff1928 /ApEinfo_revcolor=#ff1928 misc_feature 583..583 /label=CMV transcription start (+1) /ApEinfo_fwdcolor=#ff19ff /ApEinfo_revcolor=#ff19ff misc_feature 2065..2784 /label=EGFP /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 CDS 4015..4809 /codon_start=1 /transl_table=11 /product="neomycin phosphotransferase" /protein_id="AAB02575.1" /db_xref="GI:1377913" /translation="MIEQDGLHAGSPAAWVERLFGYDWAQQTIGCSDAAVFRLSAQGR PVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL LSSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDE EHQGLAPAELFARLKASMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRY QDIALATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEFF" /label=neomycin phosphotransferase /ApEinfo_fwdcolor=DarkOrange1 /ApEinfo_revcolor=DarkOrange1 misc_feature 3035..3490 /label=f1 single strand DNA origin /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan misc_feature 3831..3966 /label=SV40 origin of replication /ApEinfo_fwdcolor=#eb3c34 /ApEinfo_revcolor=#eb3c34 misc_feature 3932..3932 /label=major transcription start /ApEinfo_fwdcolor=#ff41ff /ApEinfo_revcolor=#ff41ff misc_feature 3664..3735 /label=enhancer (72-bp tandem repeat) /ApEinfo_fwdcolor=#ff2649 /ApEinfo_revcolor=#ff2649 misc_feature 3854..3874 /label=21-bp repeat /ApEinfo_fwdcolor=#ffab80 /ApEinfo_revcolor=#ffab80 misc_feature 1375..2046 /label=NDST4L /ApEinfo_fwdcolor=cyan /ApEinfo_revcolor=cyan misc_feature 2976..2988 /label=mRNA ends somewhere here /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 3587..3587 /label=transcription start (+1) of Kan/Neo resistance /ApEinfo_fwdcolor=#ff4e54 /ApEinfo_revcolor=#ff4e54 misc_feature 3927..3927 /label=major transcription start(1) /ApEinfo_label=major transcription start /ApEinfo_fwdcolor=#ff33ff /ApEinfo_revcolor=#ff33ff misc_feature 5394..6037 /label=pUC plasmid replication origin /ApEinfo_fwdcolor=#00ffff /ApEinfo_revcolor=#00ffff misc_feature 3832..3852 /label=21-bp repeat(1) /ApEinfo_label=21-bp repeat /ApEinfo_fwdcolor=#ff96a6 /ApEinfo_revcolor=#ff96a6 misc_feature 2938..2943 /label=SV40 early polyA signal /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 3552..3557 /label=-35 region /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 3883..3883 /label=major transcription start(2) /ApEinfo_label=major transcription start /ApEinfo_fwdcolor=#ff21ff /ApEinfo_revcolor=#ff21ff misc_feature 5045..5050 /label=HSV polyA signal /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 3736..3807 /label=enhancer (72-bp tandem repeat)(1) /ApEinfo_label=enhancer (72-bp tandem repeat) /ApEinfo_fwdcolor=#ff5059 /ApEinfo_revcolor=#ff5059 misc_feature 2967..2972 /label=SV40 early polyA signal(1) /ApEinfo_label=SV40 early polyA signal /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 3575..3580 /label=-10 region /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 3921..3921 /label=major transcription start(3) /ApEinfo_label=major transcription start /ApEinfo_fwdcolor=#ff36ff /ApEinfo_revcolor=#ff36ff misc_feature 5058..5063 /label=HSV polyA signal(1) /ApEinfo_label=HSV polyA signal /ApEinfo_fwdcolor=#ff0000 /ApEinfo_revcolor=#ff0000 misc_feature 3811..3831 /label=21-bp repeat(2) /ApEinfo_label=21-bp repeat /ApEinfo_fwdcolor=#ff7890 /ApEinfo_revcolor=#ff7890 misc_feature 652..1311 /label=CAT /ApEinfo_fwdcolor=#00ff00 /ApEinfo_revcolor=#00ff00 misc_feature 1592..1595 /label=CAAT box of the P2 promoter for short isoform /ApEinfo_fwdcolor=#009cff /ApEinfo_revcolor=#009cff misc_feature 1601..1607 /label=TATA box of the P2 promoter for short isoform /ApEinfo_fwdcolor=#00abff /ApEinfo_revcolor=#00abff misc_feature 1652..1774 /label=region similar to calcium influx channel (htrp3) mR /ApEinfo_fwdcolor=#0088ff /ApEinfo_revcolor=#0088ff ORIGIN 1 TAGTTATTAA TAGTAATCAA TTACGGGGTC ATTAGTTCAT AGCCCATATA TGGAGTTCCG 61 CGTTACATAA CTTACGGTAA ATGGCCCGCC TGGCTGACCG CCCAACGACC CCCGCCCATT 121 GACGTCAATA ATGACGTATG TTCCCATAGT AACGCCAATA GGGACTTTCC ATTGACGTCA 181 ATGGGTGGAG TATTTACGGT AAACTGCCCA CTTGGCAGTA CATCAAGTGT ATCATATGCC 241 AAGTACGCCC CCTATTGACG TCAATGACGG TAAATGGCCC GCCTGGCATT ATGCCCAGTA 301 CATGACCTTA TGGGACTTTC CTACTTGGCA GTACATCTAC GTATTAGTCA TCGCTATTAC 361 CATGGTGATG CGGTTTTGGC AGTACATCAA TGGGCGTGGA TAGCGGTTTG ACTCACGGGG 421 ATTTCCAAGT CTCCACCCCA TTGACGTCAA TGGGAGTTTG TTTTGGCACC AAAATCAACG 481 GGACTTTCCA AAATGTCGTA ACAACTCCGC CCCATTGACG CAAATGGGCG GTAGGCGTGT 541 ACGGTGGGAG GTCTATATAA GCAGAGCTGG TTTAGTGAAC CGTCAGATCC GCTAGCGCTA 601 CCGGACTCAG ATCTAGCTTC GACGAGATTT TCAGGAGCTA AGGAAGCTAA AATGGAGAAA 661 AAAATCACTG GATATACCAC CGTTGATATA TCCCAATCGC ATCGTAAAGA ACATTTTGAG 721 GCATTTCAGT CAGTTGCTCA ATGTACCTAT AACCAGACCG TTCAGCTGGA TATTACGGCC 781 TTTTTAAAGA CCGTAAAGAA AAATAAGCAC AAGTTTTATC CGGCCTTTAT TCACATTCTT 841 GCCCGCCTGA TGAATGCTCA TCCGGAATTC CGTATGGCAA TGAAAGACGG TGAGCTGGTG 901 ATATGGGATA GTGTTCACCC TTGTTACACC GTTTTCCATG AGCAAACTGA AACGTTTTCA 961 TCGCTCTGGA GTGAATACCA CGACGATTTC CGGCAGTTTC TACACATATA TTCGCAAGAT 1021 GTGGCGTGTT ACGGTGAAAA CCTGGCCTAT TTCCCTAAAG GGTTTATTGA GAATATGTTT 1081 TTCGTCTCAG CCAATCCCTG GGTGAGTTTC ACCAGTTTTG ATTTAAACGT GGCCAATATG 1141 GACAACTTCT TCGCCCCCGT TTTCACCATG GGCAAATATT ATACGCAAGG CGACAAGGTG 1201 CTGATGCCGC TGGCGATTCA GGTTCATCAT GCCGTCTGTG ATGGCTTCCA TGTCGGCAGA 1261 ATGCTTAATG AATTACAACA GTACTGCGAT GAGTGGCAGG GCGGGGCGTA ATTTTTTTAA 1321 GGCAGTTATT GGTGCCCTTA AACGCCTGGT GCTACGCCTG AAGAGCTCAA GCTTGAAAAG 1381 ACCGACTCCA GCTAAGCAAG AGGCACAGCA GCAGTGGCAG AAGCAGACAG GAGCAGCTGG 1441 TATTCCGGTG ATTAAATAGT TCTCATAGCC TTTTTGCTGT ACCCGGTCTG CTCCCTGGGG 1501 TAAGGcTCGT GTCCGAGAAG GAAGCTGCAT TTTAACGGTG TGCTGAACAG AGGTCTGAAT 1561 CATTCCAGCT GGCTGCTTGT TTTGAAAAGG ACAATGTGTG TATAAATAAA AAGACTGCTG 1621 GAAGGGTCCA GACACCGGCA CCGGAGCTGA GGAGTGCTCT CAGAATCCTG TTGAGGCAGA 1681 TGGCACGAAC TGAAAGCTCC GCTAATTAAC GTGGAGCCAA GTAAACCTGA ATTCTGGATA 1741 TCTCATTTTC TAACTTCGGA TAAATTCAAG TTAGCAAAAG AAAAAAAAAT TGAAATGCTT 1801 CTCTAGATAA TGCTTAAAGG ACCCTGCAGC AGTTCTTGGT ATTGGACATA GCATCTCAGC 1861 TGTTGCCTCC TGGTCCGTTG ACTACCAGAT TTGACTCATT TGTGATTCCT TCGAGAATCT 1921 CCCATGATTT GCAATGGTTA CATGAATGTT TGGGAAGGAA AACTGGCAAC ATCTTAGTAT 1981 ATGTTCTCCA TGGCACATTA GGGAAAGAAG CCAGAAAAGG CTCCCAACGC ATTGATTTTT 2041 AAAATGGATC CACCGGTCGC CACCATGGTG AGCAAGGGCG AGGAGCTGTT CACCGGGGTG 2101 GTGCCCATCC TGGTCGAGCT GGACGGCGAC GTAAACGGCC ACAAGTTCAG CGTGTCCGGC 2161 GAGGGCGAGG GCGATGCCAC CTACGGCAAG CTGACCCTGA AGTTCATCTG CACCACCGGC 2221 AAGCTGCCCG TGCCCTGGCC CACCCTCGTG ACCACCCTGA CCTACGGCGT GCAGTGCTTC 2281 AGCCGCTACC CCGACCACAT GAAGCAGCAC GACTTCTTCA AGTCCGCCAT GCCCGAAGGC 2341 TACGTCCAGG AGCGCACCAT CTTCTTCAAG GACGACGGCA ACTACAAGAC CCGCGCCGAG 2401 GTGAAGTTCG AGGGCGACAC CCTGGTGAAC CGCATCGAGC TGAAGGGCAT CGACTTCAAG 2461 GAGGACGGCA ACATCCTGGG GCACAAGCTG GAGTACAACT ACAACAGCCA CAACGTCTAT 2521 ATCATGGCCG ACAAGCAGAA GAACGGCATC AAGGTGAACT TCAAGATCCG CCACAACATC 2581 GAGGACGGCA GCGTGCAGCT CGCCGACCAC TACCAGCAGA ACACCCCCAT CGGCGACGGC 2641 CCCGTGCTGC TGCCCGACAA CCACTACCTG AGCACCCAGT CCGCCCTGAG CAAAGACCCC 2701 AACGAGAAGC GCGATCACAT GGTCCTGCTG GAGTTCGTGA CCGCCGCCGG GATCACTCTC 2761 GGCATGGACG AGCTGTACAA GTAAAGCGGC CGCGACTCTA GATCATAATC AGCCATACCA 2821 CATTTGTAGA GGTTTTACTT GCTTTAAAAA ACCTCCCACA CCTCCCCCTG AACCTGAAAC 2881 ATAAAATGAA TGCAATTGTT GTTGTTAACT TGTTTATTGC AGCTTATAAT GGTTACAaat 2941 aaagcaatag catcacaaat ttcacaaata aagcattttt ttcactgcat tctagttgtg 3001 gtttgtccaa actcatcaat gtatcttaag gcgtaaattg taagcgttaa tattttgtta 3061 aaattcgcgt taaatttttg ttaaatcagc tcatttttta accaataggc cgaaatcggc 3121 aaaatccctt ataaatcaaa agaatagacc gagatagggt tgagtgttgt tccagtttgg 3181 aacaagagtc cactattaaa gaacgtggac tccaacgtca aagggcgaaa aaccgtctat 3241 cagggcgatg gcccactacg tgaaccatca ccctaatcaa gttttttggg gtcgaggtgc 3301 cgtaaagcac taaatcggaa ccctaaaggg agcccccgat ttagagcttg acggggaaag 3361 ccggcgaacg tggcgagaaa ggaagggaag aaagcgaaag gagcgggcgc tagggcgctg 3421 gcaagtgtag cggtcacgct gcgcgtaacc accacacccg ccgcgcttaa tgcgccgcta 3481 cagggcgcgt caggtggcac ttttcgggga aatgtgcgcg gaacccctat ttgtttattt 3541 ttctaaatac attcaaatat gtatccgctc atgagacaat aaccctgata aatgcttcaa 3601 taatattgaa aaaggaagag tcctgaggcg gaaagaacca gctgtggaat gtgtgtcagt 3661 tagggtgtgg aaagtcccca ggctccccag caggcagaag tatgcaaagc atgcatctca 3721 attagtcagc aaccaggtgt ggaaagtccc caggctcccc agcaggcaga agtatgcaaa 3781 gcatgcatct caattagtca gcaaccatag tcccgcccct aactccgccc atcccgcccc 3841 taactccgcc cagttccgcc cattctccgc cccatggctg actaattttt tttatttatg 3901 cagaggccga ggccgcctcg gcctctgagc tattccagaa gtagtgagga ggcttttttg 3961 gaggcctagg cttttgcaaa gatcgatcaa gagacaggat gaggatcgtt tcgcatgatt 4021 gaacaagatg gattgcacgc aggttctccg gccgcttggg tggagaggct attcggctat 4081 gactgggcac aacagacaat cggctgctct gatgccgccg tgttccggct gtcagcgcag 4141 gggcgcccgg ttctttttgt caagaccgac ctgtccggtg ccctgaatga actgcaagac 4201 gaggcagcgc ggctatcgtg gctggccacg acgggcgttc cttgcgcagc tgtgctcgac 4261 gttgtcactg aagcgggaag ggactggctg ctattgggcg aagtgccggg gcaggatctc 4321 ctgtcatctc accttgctcc tgccgagaaa gtatccatca tggctgatgc aatgcggcgg 4381 ctgcatacgc ttgatccggc tacctgccca ttcgaccacc aagcgaaaca tcgcatcgag 4441 cgagcacgta ctcggatgga agccggtctt gtcgatcagg atgatctgga cgaagagcat 4501 caggggctcg cgccagccga actgttcgcc aggctcaagg cgagcatgcc cgacggcgag 4561 gatctcgtcg tgacccatgg cgatgcctgc ttgccgaata tcatggtgga aaatggccgc 4621 ttttctggat tcatcgactg tggccggctg ggtgtggcgg accgctatca ggacatagcg 4681 ttggctaccc gtgatattgc tgaagagctt ggcggcgaat gggctgaccg cttcctcgtg 4741 ctttacggta tcgccgctcc cgattcgcag cgcatcgcct tctatcgcct tcttgacgag 4801 ttcttctgag cgggactctg gggttcgaaa tgaccgacca agcgacgccc aacctgccat 4861 cacgagattt cgattccacc gccgccttct atgaaaggtt gggcttcgga atcgttttcc 4921 gggacgccgg ctggatgatc ctccagcgcg gggatctcat gctggagttc ttcgcccacc 4981 ctagggggag gctaactgaa acacggaagg agacaatacc ggaaggaacc cgcgctatga 5041 cggcaataaa aagacagaat aaaacgcacg gtgttgggtc gtttgttcat aaacgcgggg 5101 ttcggtccca gggctggcac tctgtcgata ccccaccgag accccattgg ggccaatacg 5161 cccgcgtttc ttccttttcc ccaccccacc ccccaagttc gggtgaaggc ccagggctcg 5221 cagccaacgt cggggcggca ggccctgcca tagcctcagg ttactcatat atactttaga 5281 ttgatttaaa acttcatttt taatttaaaa ggatctaggt gaagatcctt tttgataatc 5341 tcatgaccaa aatcccttaa cgtgagtttt cgttccactg agcgtcagac cccgtagaaa 5401 agatcaaagg atcttcttga gatccttttt ttctgcgcgt aatctgctgc ttgcaaacaa 5461 aaaaaccacc gctaccagcg gtggtttgtt tgccggatca agagctacca actctttttc 5521 cgaaggtaac tggcttcagc agagcgcaga taccaaatac tgtccttcta gtgtagccgt 5581 agttaggcca ccacttcaag aactctgtag caccgcctac atacctcgct ctgctaatcc 5641 tgttaccagt ggctgctgcc agtggcgata agtcgtgtct taccgggttg gactcaagac 5701 gatagttacc ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc acacagccca 5761 gcttggagcg aacgacctac accgaactga gatacctaca gcgtgagcta tgagaaagcg 5821 ccacgcttcc cgaagggaga aaggcggaca ggtatccggt aagcggcagg gtcggaacag 5881 gagagcgcac gagggagctt ccagggggaa acgcctggta tctttatagt cctgtcgggt 5941 ttcgccacct ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg cggagcctat 6001 ggaaaaacgc cagcaacgcg gcctttttac ggttcctggc cttttgctgg ccttttgctc 6061 acatgttctt tcctgcgtta tcccctgatt ctgtggataa ccgtattacc gccatgcat //