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IRESite: The database of experimentally verified IRES structures |  |
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| IRESite Id | IRES name | IRES functional status | IRES overlaps with promoter | Gene/virus name | IRES from gene | Plasmid name | Record type |
IRES Seq Id | IRES Struct Id | 2D Struct Id | IRES found in |
Translated in |
Transl. method |
mRNA topol. | O R F # |
Alternat. translat. init. | ORF frame- shift |
Transl. read- through |
mRNA size [nt] | IRES size [nt] | mRNA origin | IRES origin in eng. mRNA |
| 37 | BVDV1_1-385 BVDV1_29-391 |
not tested | BVDV1 | natur... | 52 691 |
3 | Bovine vir... | linear | 1 | no | 0 | no | 12573 | 385 363 |
viral | |||||||
| 9 | BVDV1 | functional | not tested | BVDV_1 | pBi5_BVDV | plasm... | 25 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3384 | 900 | viral | ||||
| 10 | BVDV1_delta1-31 | functional | not tested | BVDV_1 | Ia(delta1-31) | plasm... | 28 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3353 | 869 | viral | ||||
| 13 | BVDV1_delta173-191 | defective | not tested | BVDV_1 | IIIa(delta173-191) | plasm... | 37 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3331 | 847 | viral | ||||
| 14 | BVDV1_delta208-223 | defective | not tested | BVDV_1 | IIIb(delta208-223) | plasm... | 40 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3368 | 884 | viral | ||||
| 15 | BVDV1_delta245-254 | defective | not tested | BVDV_1 | IIIc(delta245-254) | plasm... | 43 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3374 | 890 | viral | ||||
| 16 | BVDV1_delta266-293 | defective | not tested | BVDV_1 | IIId(delta266-293) | plasm... | 46 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3356 | 872 | viral | ||||
| 11 | BVDV1_delta32-65 | functional | not tested | BVDV_1 | Ib(delta32-65) | plasm... | 31 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3350 | 866 | viral | ||||
| 17 | BVDV1_delta323-337 | defective | not tested | BVDV_1 | IIIe(delta323-337) | plasm... | 49 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3369 | 885 | viral | ||||
| 18 | BVDV1_delta386-901 | defective | not tested | BVDV_1 | ORF(delta386-901) | plasm... | 52 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
2869 | 385 | viral | ||||
| 12 | BVDV1_delta78-137 | defective | not tested | BVDV_1 | II(delta78-137) | plasm... | 34 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3324 | 840 | viral | ||||
| 19 | BVDV1_in102-105 | defective | not tested | BVDV_1 | IIa-b(In102-105) | plasm... | 55 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3388 | 904 | viral | ||||
| 20 | BVDV1_in170-173 | defective | not tested | BVDV_1 | IIIa(In170-173) | plasm... | 58 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3388 | 904 | viral | ||||
| 21 | BVDV1_in225-228 | defective | not tested | BVDV_1 | IIIb(In225-228) | plasm... | 61 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3388 | 904 | viral | ||||
| 22 | BVDV1_in237-244 | defective | not tested | BVDV_1 | IIIb-c(In237-244) | plasm... | 64 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3392 | 908 | viral | ||||
| 24 | BVDV1_in375-378 | defective | not tested | BVDV_1 | AUG(In375-378) | plasm... | 70 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3388 | 904 | viral | ||||
| 23 | BVDV1_in63-66 | functional | not tested | BVDV_1 | Ib(In63-66) | plasm... | 67 | Bovine vir... | 1xCercopit... | 1xin vivo | linear | 2 | no no |
0 0 |
no no |
3388 | 904 | viral |